Appendices

4,995 DNA sequences used to construct test datasets.

38,279 DNA sequences used to construct training datasets.

2,088 DNA sequences with more than 1,000 nucleotides.

Results of testing TFbinding on test dataset.

Results of testing TFbinding on randomly selected negative data.

Results of testing TFbinding on ENCODE ChIP-seq data of CTCF and HDAC1.

4,995 binding sites and 9,990 non-binding sites used as the input of DeepBind.

ROC curves of testing TFbinding_r2 and DeepBind on 10 TFs of Dataset 1.