Data set
Protein-DNA complex data
Two sequence data sets are used for training two prediction models:
(1) data set for a prediction model which uses both DNA and protein sequences,
(2) data set for a prediction model which uses DNA sequence data alone. [Click here] to download data sets.
| Prediction model |
#DNA sequences |
#Protein sequences |
Binding DNA sequence fragments |
Non-binding DNA sequence fragments |
| A model which uses both DNA and protein sequences |
1416 |
837 |
20,588 |
27,630 |
| A model which uses DNA sequence data alone |
1416 |
0 |
20,378 |
23,950 |
Binding criteria
A binding site should be involved in at least one of the following interactions between RNA and protein: hydrogen bonds, water bridges and hydrophobic interactions.
[Click here] for detailed information.